Mariane Pivard published this dataset on figshare in June 2026. It lists genes significantly differentially expressed for at least one pairwise comparison at a 1h30 time point. The 21.4 KB XLSX file contains gene names annotated according to Aureowiki Newman gene annotation, with fold change and adjusted p-value thresholds indicated.
Use Cases
- Identify upregulated genes based on fold change > 2 thresholds
- Identify downregulated genes based on fold change < -2 thresholds
- Filter for statistically significant genes based on adjusted p-value < 0.05
- Compare gene annotation sources (Aureowiki Newman vs. pangenome)
Strengths
- 21.4 KB file size suggests a focused list of significant genes
- Gene names are annotated with specific conventions (Aureowiki Newman, pangenome prefix)
- Statistical analysis performed with Negative Binomial GLM Wald test and Benjamini–Hochberg correction
Limitations
- Row count is unknown, which may limit suitability assessment
- Column-level documentation is absent; field semantics must be inferred after download
Provenance
- Source
- figshare
- Collection Method
- Negative Binomial GLM with Wald test for pairwise comparisons with Benjamini–Hochberg correction.
- Freshness
- Last updated 2026-06-03 17:36:51; freshness should be verified