HPV Genomic Sequences from NCBI Virus with Origin and Completeness

A collection of all HPV sequences retrieved from the NCBI Virus database. The dataset includes genotype, accession number, country or region of origin, isolation source, and genome completeness. It was created by Alan López Leal and served as the basis for entropy analyses.

Use Cases

• Analyze genomic entropy based on the sequence completeness mentioned in the description
• Map HPV genotype distribution based on the country or region of origin data
• Study virus-host interactions based on the isolation source information

Strengths

• Includes genome completeness metadata for each sequence
• Provides country or region of origin for geographic analysis
• Released under a permissive CC-BY-4.0 license

Limitations

• Dataset is very small at 30.4 KB, indicating limited scope
• Column-level documentation is absent; field semantics must be inferred after download
• Row count is unknown, which may limit suitability assessment

Provenance

Source

NCBI Virus database

Collection Method

Retrieved from NCBI Virus

Freshness

Last updated 2026-05-15 17:42:04

Geography

Global, based on country or region of origin field