Depth of Coverage by Genes for HIV-1 Samples from Long-Read Sequencing

Depth of coverage data for HIV-1 genes, likely derived from long-read sequencing samples. The dataset was created by Nakarin Pamornchainavakul and last updated on April 28, 2026. It is a small file of 9.4 KB, stored in XLSX format.

Use Cases

• Benchmarking error-correction methods for viral quasispecies analysis based on the described QoALa workflow.
• Analyzing intra-host diversity dynamics of HIV-1 based on the concept of viral quasispecies mentioned in the description.
• Identifying rare viral haplotypes in sequencing data based on the methodology's reported capability.
• Comparing quasispecies composition across related viral samples based on the integrated visualization capabilities described.

Strengths

• Dataset is openly licensed under CC-BY-4.0.
• File size is precisely 9.4 KB, indicating a compact and focused dataset.
• Last update date is explicitly provided as 2026-04-28.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare, author Nakarin Pamornchainavakul.

Collection Method

Likely generated from long-read sequencing data as part of the QoALa workflow evaluation.

Time Range

null

Freshness

Last updated 2026-04-28 17:35:06; freshness should be verified.

Geography

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