RNA-seq Analysis: Differentially Expressed Genes in Arabidopsis TRB Mutants

Maik Mendler published this dataset on figshare in 2026. It contains results from an RNA-seq analysis comparing Arabidopsis thaliana genotypes, including wild-type (Col-0) and mutants of TRB proteins (trb1-2, trb2-2, trb2-3, trb3-2). The 799.0 KB XLSX file includes tables of differentially expressed genes (DEGs) for various pairwise comparisons, a count matrix, and a list of detected genes.

Use Cases

• Identify differentially expressed genes based on comparisons between single and double TRB mutants versus wild-type.
• Analyze gene expression clusters based on the PAM-clustered, row-scaled count matrix.
• Categorize genes based on their differential expression patterns across all tested conditions.

Strengths

• Data is structured in multiple Excel tabs for specific genotype comparisons, facilitating targeted analysis.
• Includes a list of all genes with acceptable read counts (sum > 50 counts across all samples).
• Released under a permissive CC-BY-4.0 license.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare

Collection Method

Likely generated from RNA sequencing experiments on Arabidopsis thaliana plants.

Freshness

Last updated 2026-04-21 17:51:24; freshness should be verified.