Genomic Loci with Copy Number Variation Across Trypanosomatidae Samples

Estimated integer copy number values for genomic loci, with a file size of 21.6 KB. The dataset includes potential functional annotations for protein-coding genes, inferred from TriTrypDB or BLASTP searches against the L. major Friedlin reference genome. Authored by Evgeny S. Gerasimov and last updated on 2026-05-29.

Use Cases

• Identify genomic deletions based on CNV values of zero as mentioned in the description.
• Study gene presence or absence in Trypanosomatidae genomes based on the documented bioinformatic analysis.
• Annotate protein function for genes within CNV regions using the provided InterProScan, TMHMM, and DeepLoc predictions.
• Correlate copy number variation with gene expression using TMP values from available RNA-seq datasets.

Strengths

• Includes functional gene annotations from TriTrypDB and BLASTP searches.
• Provides bioinformatic analysis for a specific gene (LmjF.34.2380) with multiple prediction types.
• Released under a permissive CC-BY-4.0 license.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• The dataset is small (21.6 KB), indicating a limited scope.

Provenance

Source

figshare

Collection Method

Bioinformatic analysis inferred from the description, likely involving genomic sequence comparison and annotation.

Freshness

Last updated 2026-05-29 17:29:26; freshness should be verified.