GSEA Results for agr-Type Pairwise Comparisons

GSEA results for all agr-type pairwise comparisons were generated by Mariane Pivard and published on figshare in June 2026. The dataset contains normalized enrichment scores, p-values, and FDR q-values for enriched pathways. It is a small dataset of 53.3 KB.

Use Cases

• Identify significantly enriched biological pathways based on normalized enrichment scores.
• Compare pathway activation between different agr-type strains based on pairwise comparisons.
• Validate differential expression results using gene-set enrichment analysis.
• Filter statistically significant pathways based on adjusted p-value thresholds.

Strengths

• Pathway results are filtered with an adjusted p-value threshold of <0.05.
• Gene-set size parameters are explicitly defined with minGSSize of 10 and maxGSSize of 500.
• The dataset includes normalized enrichment scores (NES), p-values, and FDR q-values.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• The dataset's small size (53.3 KB) suggests limited scope.

Provenance

Source

figshare

Collection Method

Gene-set enrichment analysis (GSEA) performed on differential expression results, likely from DESeq2.

Freshness

Last updated 2026-06-03 17:36:55; freshness should be verified.