Entinostat Response Expression Profiles with KALLISTO Counts and LIMMA-Fit Values

KALLISTO estimated counts and LIMMA-fit values for Entinostat response expression profiles is a tabular dataset shared on figshare. The dataset contains transcript-level data for the human fungal pathogen Histoplasma capsulatum, with columns for gene identifiers, differential expression statistics, and estimated counts. It was authored by Nebat Ali and last updated on March 17, 2026.

Use Cases

• Identify differentially expressed transcripts based on LIMMA BH-adjusted p-values for 7 contrasts.
• Analyze gene expression levels using the KALLISTO estimated counts for 21 samples.
• Investigate promoter binding by Ryp transcription factors based on the Ryp1_ChIP to Ryp4_ChIP columns.
• Cross-reference gene annotations using the multiple systematic gene name columns (HcG217B_pred, HcG217B_rc, HcG217B_acc).

Strengths

• Data is sufficient to recapitulate the original LIMMA analysis, as stated in the description.
• Includes multiple gene identifier systems for cross-referencing.
• Released under a permissive CC-BY-4.0 license.
• File size is 11.6 MB, indicating a manageable download.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare

Collection Method

Likely derived from RNA-seq analysis using KALLISTO for quantification and LIMMA for differential expression.

Time Range

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Freshness

Last updated 2026-03-17 17:33:29.

Geography

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