Mouse Brain Cell Type Density Atlas with 5274 Transcriptomic Clusters

5274 transcriptomic clusters and 458 functional morphological-electrophysiological types are mapped in a 3D mouse brain atlas at 25 μm³ voxel resolution. This quantitative atlas integrates transcriptomic, morphological, and electrophysiological data to model cell type spatial density distributions. It was created by Csaba Verasztó and published in 2026.

Use Cases

• Map spatial density distributions for 5274 transcriptomic clusters across the mouse brain.
• Correlate transcriptomic types with functional morphological-electrophysiological types for integrative analysis.
• Apply voxel-wise corrections using Nissl staining intensity data to refine density estimates in dense regions.
• Parse individual cell types using the provided computational tools to identify novel features.

Strengths

• Integrates data on 5274 transcriptomic clusters and 458 functional morphological-electrophysiological types.
• Provides high-resolution spatial mapping at a 25 μm³ voxel size.
• Uses multiple data modalities including transcriptomic, morphological, and electrophysiological features.

Limitations

• The dataset size is extremely small (505.0 B), indicating it may contain only summary metadata or a single file pointer.
• Specific row and column counts for the underlying data are unknown, limiting assessment of analytical scope.
• Focus is exclusively on the mouse brain, limiting applicability to other species or organs.

Provenance

Source

Csaba Verasztó via figshare.

Collection Method

Generated by scaling regional density estimates from brain slices, applying voxel-wise corrections with Nissl staining, and integrating patch-sequencing datasets.

Freshness

Last updated on 2026-03-24.

Geography

Mouse brain.