Sabrina Hepner's dataset, published on figshare under CC-BY-4.0, provides a list of bacterial isolates. The table includes epidemiological metadata, genome completeness assessments, and details on plasmid presence and location. The dataset was last updated on May 8, 2026, and is available as a 67.7 KB XLSX file.
Use Cases
- Correlating epidemiological trends with genomic features based on the provided metadata.
- Assessing plasmid carriage and its potential impact on bacterial isolates based on the presence/absence matrix.
- Evaluating genome assembly quality for downstream analysis based on the completeness information.
- Studying the genetic context of specific loci, such as vls/vlsE, based on their reported plasmid or chromosomal location.
Strengths
- Dataset is openly licensed under CC-BY-4.0, permitting broad reuse.
- Includes multiple layers of information per isolate, such as epidemiology, genome quality, and plasmid data.
- File size is 67.7 KB, indicating a compact and likely focused collection.
Limitations
- Row count is unknown, which may limit suitability assessment for large-scale analysis.
- Column-level documentation is absent; field semantics must be inferred after download.
- Description metadata is limited; actual data quality requires manual inspection after download.
Provenance
- Source
- figshare, author Sabrina Hepner.
- Collection Method
- Likely compiled from laboratory or sequencing studies, but the specific collection method is not described.
- Time Range
- null
- Freshness
- Last updated 2026-05-08 18:00:04; freshness should be verified.
- Geography
- null