Metabolic Pathway Analysis of SU37A and SU91A Vibrio parahaemolyticus Genomes

Md. Habib Ullah Masum published genomic analysis data for two Vibrio parahaemolyticus isolates (SU37A and SU91A) from Pacific white shrimp on 2026-04-09. The dataset includes results from whole-genome Nanopore sequencing, de novo assembly, and annotation, identifying antimicrobial resistance and virulence genes. The 15.3 KB XLSX file supports research into the pathogen's metabolic adaptability and zoonotic potential.

Use Cases

• Comparative phylogenomic analysis based on the clustering of SU91A with a clinical strain and SU37A with a non-clinical strain.
• Identifying patterns of antimicrobial resistance gene acquisition based on the presence of vanT, vanY, tet, adeF, and CARB-18 genes.
• Studying metabolic adaptability and stress response based on the functional subsystem analysis mentioned in the description.
• Investigating mobile genetic element locations adjacent to regulatory genes to understand resistance dissemination.

Strengths

• Data is derived from high-quality, de novo genome assemblies of bacterial isolates.
• Annotation identifies specific antimicrobial resistance genes (vanT, vanY, tet, adeF, CARB-18) and virulence factors.
• Includes phylogenomic analysis comparing isolates to known clinical and non-clinical strains.

Limitations

• Row count and specific column-level documentation are unknown, requiring manual inspection after download.
• The dataset is very small (15.3 KB), indicating limited scope, likely containing summary analysis rather than raw sequence data.
• Geographic and temporal coverage for the source samples is not specified in the provided metadata.

Provenance

Source

figshare, author Md. Habib Ullah Masum

Collection Method

Whole-genome sequencing using the Nanopore platform followed by de novo assembly and annotation.

Time Range

null

Freshness

Last updated 2026-04-09 17:29:42; freshness should be verified.

Geography

Isolates are from Pacific white shrimp; the study context is Bangladesh's fisheries sector.