HIV-1 Pseudovirus Sequence Metadata for Global and Clade Panels

Metadata associated with HIV-1 pseudovirus sequence data used in a study published in PLoS Pathogens. The table includes metadata for 205 viruses from a global panel, 119 from a more limited global panel, 200 from a C clade panel, and AMP V703 and V704 sequences. It was authored by Bette Korber and last updated on April 23, 2026.

Use Cases

• Mapping viral sequence origins based on country of sampling and year of isolation metadata.
• Analyzing HIV-1 clade and circulating recombinant form (CRF) distribution across different panels.
• Linking experimental pseudovirus data to public sequence repositories using GenBank accession numbers.
• Studying treatment status associations within defined viral panels.

Strengths

• Includes metadata for 524 distinct viruses across multiple defined panels.
• Provides concrete identifiers such as GenBank accession numbers and AMP identifiers.
• Released under a permissive CC-BY-4.0 license.
• Metadata includes key attributes like clade, country, and year of isolation.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• The dataset is very small at 42.9 KB, indicating limited scope.

Provenance

Source

figshare, associated with a PLoS Pathogens study.

Collection Method

Likely compiled from laboratory and public database sources for the referenced study.

Time Range

Year of isolation for each virus is included as metadata.

Freshness

Last updated 2026-04-23 17:40:43; freshness should be verified.

Geography

Country of sampling for each virus is included as metadata.