8,105 Prophage Metadata Records from 2,527 Klebsiella pneumoniae Isolates

8,105 prophages detected across 2,527 Klebsiella pneumoniae species complex isolates. The metadata table includes genomic coordinates, length, quality estimates, host metadata, and phage cluster assignments. It was authored by Aleksandra Otwinowska and last updated on April 28, 2026.

Use Cases

• Classifying prophage diversity based on variant cluster assignments at multiple wGRR thresholds.
• Correlating prophage presence or characteristics with bacterial host metadata such as species, sequence type (ST), and K- or O-locus.
• Assessing prophage sequence quality and completeness using the provided CheckV estimates.

Strengths

• Includes 8,105 prophage records from a substantial collection of 2,527 bacterial isolates.
• Provides multiple data dimensions: genomic coordinates, quality scores, host metadata, and cluster assignments.
• Dataset is openly available under a CC-BY-4.0 license.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Data may reflect bias inherent to the source GWAS dataset from figshare.

Provenance

Source

figshare

Collection Method

Likely derived from genomic analysis of isolates in a GWAS dataset.

Freshness

Last updated 2026-04-28 17:23:35; freshness should be verified.