RAGER Pipeline: Tools and Resources for ATAC-seq and RNA-seq Analysis
by Yunjie Liu·Updated 1mo ago
17.5 KB1files
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Description
17.5 KB Excel spreadsheet listing tools and resources used in the RAGER analysis pipeline. The dataset, authored by Yunjie Liu, was last updated on May 22, 2026, and is shared under a CC-BY-4.0 license on figshare.
Use Cases
Benchmarking analysis pipelines based on the listed toolset.
Reproducing the RAGER pipeline methodology based on the documented resources.
Selecting software for chromatin accessibility (ATAC-seq) and gene expression (RNA-seq) studies.
Designing curriculum or tutorials for integrated genomic data analysis.
Strengths
Clear licensing (CC-BY-4.0) permitting reuse and modification.
Specific focus on a named analysis pipeline (RAGER) for two genomics techniques.
Small file size (17.5 KB) allows for quick inspection.
Limitations
Description metadata is limited; actual data quality requires manual inspection after download.
Column-level documentation is absent; field semantics must be inferred after download.
Row count is unknown, which may limit suitability assessment.
Provenance
Source
figshare
Collection Method
Likely compiled by the author to document the pipeline.
Time Range
null
Freshness
Last updated 2026-05-22 17:41:28; freshness should be verified.
Geography
null
Requires software capable of reading XLS (Excel) format.