Polyphyletic MLST Sequence Types for Bacterial Pathogen Surveillance

Federica Palma's 16.3 KB Excel file discusses a unified strain taxonomy system for bacterial pathogens. The dataset likely contains information on Life Identification Number (LIN) codes, a proposed stable multilevel strain taxonomy. This resource, updated in June 2026, aims to address challenges in classification instability and nomenclature disconnection in core genome multilocus sequence typing.

Use Cases

• Standardizing strain definitions based on the proposed Life Identification Number (LIN) method.
• Tracking bacterial pathogen epidemiology using a stable multilevel strain taxonomy.
• Bridging classical MLST identifiers with new cgMLST-based nomenclature for research communication.
• Analyzing classification stability in bacterial strain genotyping systems.

Strengths

• Dataset is small (16.3 KB), facilitating quick download and inspection.
• License is permissive (CC-BY-4.0), allowing for broad reuse and sharing.
• Focuses on a specific methodological challenge in bacterial genomics.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• The description is conceptual; the actual data content requires manual inspection.

Provenance

Source

figshare

Freshness

Last updated 2026-06-04 17:40:04.