TIPP-SD: Properties of Simulated Genomic Datasets

50 known genomes were used to design the TIPP-SD method, with additional genomes used for its evaluation. The dataset is a 5.5 KB Excel file containing properties of these simulated datasets, authored by Chengze Shen and last updated in May 2026. It is shared under a CC-BY-4.0 license on the figshare platform.

Use Cases

• Benchmarking taxonomic identification tools based on simulated genomic data.
• Evaluating the performance of phylogenetic placement methods like TIPP-SD.
• Designing simulation studies for genomic method validation.

Strengths

• Dataset is small (5.5 KB), facilitating quick download and inspection.
• Explicitly states 50 known genomes were used for method design, providing a clear scope.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.

Provenance

Source

Chengze Shen

Collection Method

Properties derived from simulated genomic datasets.

Freshness

Last updated 2026-05-28 17:42:52; freshness should be verified.