TCGA and METABRIC: Processed Cancer Genomics Analysis Datasets

A 250.0 KB reproducibility package from Wenhan Yang, last updated in June 2026. It contains processed analysis datasets from the TCGA and METABRIC cancer genomics projects, along with code, a manifest, and output summaries. The package is shared under a CC-BY-4.0 license.

Use Cases

• Reproducing specific cancer genomics analyses based on the included processed datasets and code.
• Benchmarking new machine learning models against the provided final analysis output summaries.
• Understanding data processing pipelines for TCGA and METABRIC data based on the included analysis code.

Strengths

• Includes processed data from two major cancer genomics consortia, TCGA and METABRIC.
• Provides full reproducibility materials, including analysis code and session information.
• Shared under a permissive CC-BY-4.0 license.

Limitations

• The 250.0 KB size indicates a very limited scope, likely containing summary or sample data rather than full datasets.
• Row count and column-level documentation are unknown, requiring manual inspection after download.
• Description metadata is limited; actual data quality and completeness require verification.

Provenance

Source

Processed data originates from The Cancer Genome Atlas (TCGA) and the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC).

Collection Method

Data was processed by the author, Wenhan Yang, as part of an analysis; specific methods are in the included code.

Freshness

Last updated 2026-06-02 17:33:54; freshness should be verified.