HPV Genotype Gene Coordinate Boundaries from PaVE Reference Genomes

Genomic start and end positions for early (E1–E7) and late (L1–L2) genes across multiple Human Papillomavirus (HPV) genotypes. The coordinates were sourced from reference genomes in the Papillomavirus Episteme (PaVE) database and used to map gene regions for entropy-based variability analysis. The dataset was authored by Alan López Leal and last updated on May 15, 2026.

Use Cases

• Mapping gene regions onto sequence alignments based on reference genome coordinates.
• Analyzing genetic variability via entropy calculations based on defined gene boundaries.
• Comparing gene presence or absence across HPV genotypes based on annotated coordinates.

Strengths

• Data is derived from the authoritative Papillomavirus Episteme (PaVE) database.
• The dataset is small (9.5 KB), making it easy to download and inspect.

Limitations

• The dataset is tiny (9.5 KB), indicating a very limited scope.
• Row count and column-level documentation are unknown, requiring manual inspection after download.

Provenance

Source

Papillomavirus Episteme (PaVE) database reference genomes.

Collection Method

Gene boundaries were obtained from curated reference genomes and used to map regions onto multiple sequence alignments.

Freshness

Last updated 2026-05-15 17:42:13.