Transcription Factor Motif Analysis Across Developmental Stages

Mohita Gaur's dataset provides lists of transcription factors and their associated transcription measured by RNA-seq across multiple genomic regions and developmental time points. The data is organized into nine tables corresponding to promoters, enhancers, and gene bodies for P4, P10, and P28 stages. This 448.2 KB ZIP file was last updated in April 2026.

Use Cases

• Identify transcription factors with significant motif enrichment in P4 promoters versus P4 enhancers using the S16 and S17 tables.
• Compare RNA-seq measured transcription levels for TFs across developmental stages (P4, P10, P28) using the promoter tables (S16, S19, S22).
• Analyze co-regulation patterns by correlating TF activity in gene body regions (S18, S21, S24) with activity in corresponding enhancer regions.
• Train a classifier to predict genomic region type (promoter, enhancer, gene body) based on TF motif and RNA-seq profiles from the nine provided tables.

Strengths

• Data is structured across nine specific tables for clear comparative analysis.
• Published under a permissive CC-BY-4.0 license for reuse.
• Last updated date indicates recent maintenance.

Limitations

• The dataset is small at 448.2 KB, suggesting limited scope or sample size.
• Exact row counts and column names are unknown, hindering precise assessment of data volume and features.
• The description implies the data is supplementary to a figure (S5), which may limit its standalone context.

Provenance

Source

Mohita Gaur via figshare.

Collection Method

Transcription measured by RNA-seq, likely derived from genomic analysis.

Time Range

Covers developmental stages P4, P10, and P28.

Freshness

Last updated in April 2026.

Geography

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