Brain Region Cell and Neuron Density Estimates from MERFISH

Csaba Verasztó's dataset provides total cell and neuron density counts across major brain regions, derived from MERFISH data. The data aggregates density values and transcriptomic cell type counts, expressed as cells per cubic millimeter. The dataset is available as a 5.5 KB XLS file under a CC BY 4.0 license.

Use Cases

• Analyze spatial density variations of cells and neurons across major brain regions.
• Correlate transcriptomic cell type counts with specific brain areas using the aggregated density values.
• Use the cell/mm³ density estimates to model cellular composition in different brain regions.

Strengths

• Data is derived from MERFISH, a high-resolution spatial transcriptomics method.
• Aggregates multiple data aspects including density values and transcriptomic cell type counts.
• The dataset is openly shared under a permissive CC BY 4.0 license.

Limitations

• The dataset is very small at 5.5 KB, indicating limited scope and likely a summary table rather than raw data.
• The exact number of rows, columns, and sample data are unknown, limiting assessment of analytical depth.
• Relies on aggregated estimates; underlying raw MERFISH data or detailed methodological parameters are not included.

Provenance

Source

figshare

Collection Method

Aggregated from MERFISH (Multiplexed Error-Robust Fluorescence In Situ Hybridization) data.

Freshness

Last updated March 24, 2026.