TPM Values for JA Pathway Genes in P. brassicae-Infected Oilseed Rape Roots

Transcripts per million (TPM) values for jasmonic acid (JA) pathway genes derived from a transcriptome sequencing experiment. The dataset, created by Jiaqi Liu, is available under a CC-BY-4.0 license and was last updated on 2026-05-05. The data is stored in a 14.7 KB XLSX file.

Use Cases

• Identify differentially expressed JA pathway genes based on TPM values from infected vs. control samples.
• Analyze the role of the jasmonic acid signaling pathway in plant defense against P. brassicae.
• Validate transcriptomic findings from RNA-seq experiments using the provided TPM quantification.
• Correlate gene expression patterns with phenotypic responses to clubroot infection in oilseed rape.

Strengths

• Data is openly shared under a permissive CC-BY-4.0 license.
• The 14.7 KB file size suggests a focused dataset on specific genes, which may be easier to analyze.
• The dataset provides a quantitative measure (TPM) for gene expression analysis.

Limitations

• Row count and specific column definitions are unknown, requiring manual inspection after download.
• The description is minimal, lacking details on experimental design, sample replicates, or statistical methods.
• The dataset's small size indicates it likely covers a limited set of genes rather than a full transcriptome.

Provenance

Source

figshare, author Jiaqi Liu.

Collection Method

Derived from transcriptome sequencing of P. brassicae-infected oilseed rape (Brassica napus) roots.

Freshness

Last updated 2026-05-05 17:39:15; freshness should be verified.