Pangenome of 728 Listeria monocytogenes Genomes from Food Sources

728 Listeria monocytogenes genomes from food origins were analyzed using Panaroo for pangenome construction. The dataset, created by João Pedro Vasques da Conceição, is 441.0 MB in size and was last updated on 2026-04-27. The genomic sequences were retrieved from the LISTADAPT dataset.

Use Cases

• Comparative genomics analysis based on the pangenome structure.
• Studying genetic diversity and adaptation of Listeria monocytogenes based on food source origins.
• Identifying core and accessory genome elements for pathogen surveillance.
• Benchmarking pangenome analysis pipelines using the Panaroo output.

Strengths

• Contains 728 bacterial genomes, providing a substantial sample size for analysis.
• Pangenome analysis was performed with a specific, named tool (Panaroo).
• Data is sourced from a published, citable dataset (LISTADAPT).
• Dataset is licensed under CC-BY-4.0, allowing for open reuse.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Data may reflect source bias inherent to the original LISTADAPT collection.

Provenance

Source

LISTADAPT dataset (https://doi.org/10.1038/s41597-022-01278-6)

Collection Method

Pangenome analysis carried out with Panaroo on retrieved genomes.

Freshness

Last updated 2026-04-27 03:40:40; freshness should be verified.