Cattle-Derived E. coli Isolates from Bangladesh: Genomic and Phenotypic Data

Fahad Khan's dataset contains supporting data for a study on non-O157 Escherichia coli from cattle in Bangladesh. It includes PCR screening results for 354 isolates, antimicrobial susceptibility testing for 65 isolates, and genomic analysis for 11 sequenced isolates. The dataset was last updated on 2026-05-10.

Use Cases

• Identify virulence gene presence (stx1, stx2) based on PCR screening data.
• Analyze antimicrobial resistance patterns based on zone diameter measurements and CLSI interpretations.
• Conduct phylogenomic and pangenome analysis based on core SNP alignments and gene presence/absence matrices.
• Investigate plasmid and prophage content based on mobilome analysis outputs.

Strengths

• Includes PCR screening data for 354 bacterial isolates.
• Provides raw antimicrobial susceptibility test results for 65 isolates with CLSI interpretations.
• Contains comprehensive genomic outputs for 11 sequenced isolates, including plasmid and prophage predictions.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count for the main data files is unknown, which may limit suitability assessment.

Provenance

Source

Fahad Khan via figshare

Collection Method

Data generated for a study investigating genomic and phenotypic characteristics of cattle-derived E. coli isolates.

Freshness

Last updated 2026-05-10 10:59:31; freshness should be verified.

Geography

Bangladesh