135 Wiregrass LRLP samples with per-individual TSWV insertion genotype calls. The primary genotyping metric is the percentage of LRLP reads covering a specific 63.9 kb insertion region on chromosome 1. Kendall Lee authored this dataset, which was last updated on 2026-05-22.
Use Cases
- Classifying TSWV insertion presence based on the Coverage_Call categories (ABSENT, NOISE, UNCERTAIN, PRESENT_LIKELY, PRESENT_CONFIDENT).
- Analyzing insertion depth and support using the Insertion_Mean and Insertion_BP metrics.
- Investigating potential multi-mapping inflation in flanking regions using the provided Flank_Mean and Dosage_Ratio columns.
Strengths
- Genotype calls for 135 individual samples.
- Clear, defined categories for the primary genotyping metric (Coverage_Call).
- Includes a specific 63.9 kb genomic region (NC_Chr01:12,456,955–12,520,822).
Limitations
- Row count is unknown, which may limit suitability assessment.
- Column-level documentation is absent; field semantics must be inferred after download.
- The dataset is very small at 7.6 KB, indicating limited scope.
Provenance
- Source
- figshare
- Collection Method
- Likely derived from LRLP (Long-Read/Linked-Read) sequencing data analysis.
- Freshness
- Last updated 2026-05-22 21:31:22; freshness should be verified.