DDX3X RNA Helicase Phase Separation Data and Analysis Scripts

453 MB of data and scripts supporting research on the phase separation of the DDX3X RNA helicase's N-terminal region. The dataset includes R and Python scripts for analyzing outputs from rG4detector, pqsfinder, and G4Hunter software. It was uploaded by Yuki Toyama and last updated on April 30, 2026.

Use Cases

• Identify potential G-quadruplex motifs in transcripts based on the outputs from pqsfinder, G4Hunter, and rG4detector software.
• Analyze transcript annotation categories (enriched, neither, depleted) using the included Python scripts.
• Generate FASTA sequence files from gene lists using the provided R script.
• Reproduce computational analyses from the associated research paper on DDX3X phase separation.

Strengths

• Includes both R (4.3.2) and Python (3.11.7) scripts with specific library versions for reproducibility.
• Contains pre-processed output files from three distinct bioinformatics tools (rG4detector, pqsfinder, G4Hunter).
• Dataset is 453 MB, indicating a substantial collection of analysis code and intermediate data.

Limitations

• Description metadata is limited; actual data quality requires manual inspection after download.
• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.

Provenance

Source

figshare

Collection Method

Data and scripts generated for and uploaded alongside a specific research paper.

Freshness

Last updated 2026-04-30 09:12:54; freshness should be verified.