Plantago Lanceolata Transcriptomes and NLR Loci for Five Genotypes Under Pathogen Stress

Transcriptome sequencing data from five Plantago lanceolata genotypes inoculated with the fungal pathogen Podosphaera plantaginis. A de novo assembly produced 24,332 gene models with an N50 of 1,329 base pairs and 66.5% gene space completeness. The research was conducted by Pezhman Safdari at the University of Helsinki to explore the molecular basis of phenotypic resistance diversity.

Use Cases

• Classifying genotype-specific gene expression patterns based on the described unique expression profiles.
• Identifying candidate NLR loci associated with resistance based on the discovered diverse NLR repertoire.
• Analyzing selection patterns on defense genes based on the evidence of selection mentioned in the description.
• Modeling the crosstalk between different defense mechanisms based on the described phenotypic resistance diversity.

Strengths

• De novo transcriptome assembly contains 24,332 gene models, suggesting a substantial genetic catalog.
• Assembly metrics include an N50 value of 1,329 base pairs and 66.5% gene space completeness, indicating a high-quality assembly.
• Data captures responses from five distinct plant genotypes, enabling comparative analysis of individual variation.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Last update date is unknown; freshness unverified.

Provenance

Source

University of Helsinki

Collection Method

RNA-sequencing of Plantago lanceolata genotypes inoculated with Podosphaera plantaginis, followed by de novo transcriptome assembly.

Time Range

null

Freshness

Last updated date is unknown.

Geography

null