Phylogenetic Trees for Taxonomic Assignment of Actinomycetoma Isolates

De novo phylogenies inferred for novel and public actinomycetoma isolates using iqtree2 with automated model selection. The dataset includes phylogenetic trees constructed from the GTDB bac120 gene set, supported by 1000 ultrafast bootstraps. It was authored by Andrew Keith Watson and last updated on 2026-05-28.

Use Cases

• Taxonomic assignment of novel bacterial isolates based on phylogenetic relationships.
• Validation of taxonomic classifications for isolates from public collections using inferred phylogenies.
• Comparative phylogenetic analysis leveraging the GTDB bac120 gene set.
• Assessment of evolutionary relationships among actinomycetoma isolates using bootstrap-supported trees.

Strengths

• Phylogenies are supported by 1000 ultrafast bootstraps, providing confidence metrics.
• Data is openly licensed under CC-BY-4.0.
• Analysis uses the standardized GTDB bac120 gene set for consistency.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare

Collection Method

De novo phylogenies inferred using iqtree2 with automated model selection.

Freshness

Last updated 2026-05-28 11:59:15; freshness should be verified.