Predicted Biosynthetic Gene Clusters for Bacillus Pseudomycoides CHAES I 2_2

Alina Kharchuk provides predicted secondary metabolite biosynthetic gene clusters (BGCs) for the Bacillus pseudomycoides CHAES I 2_2 strain. The dataset contains results from a comprehensive antiSMASH 8.0.4 analysis performed via Docker, including Pfam, TIGRFam, MIBiG, and ClusterBlast annotations. It was last updated in April 2026.

Use Cases

• Compare predicted gene clusters against the MIBiG database of experimentally characterized BGCs using the --cc-mibig analysis results.
• Identify potential RiPP biosynthetic gene clusters using the RREFinder precision mode annotations (--rre).
• Analyze transcription factor binding sites (TFBS) within predicted clusters using the --tfbs prediction output.
• Map Pfam domain annotations to Gene Ontology terms via the --pfam2go analysis for functional classification.
• Perform comparative phylogenetics of biosynthetic gene clusters using constructed SMCOG trees (--smcog-trees).

Strengths

• Analysis performed with antiSMASH version 8.0.4, a standard tool for BGC prediction.
• Includes results from 13 distinct analytical modules, such as Pfam, TIGRFam, MIBiG, and ClusterBlast comparisons.
• Dataset is openly licensed under CC-BY-4.0.

Limitations

• Dataset is very small at 8.4 KB, indicating limited scope to a single bacterial strain.
• Row count and specific column structure are unknown, complicating direct computational use.
• Data is static, representing a single analysis snapshot with no update schedule.

Provenance

Source

Alina Kharchuk via figshare.

Collection Method

BGC identification and annotation performed using antiSMASH 8.0.4 in standalone mode executed via Docker, with gene prediction by Prodigal under bacterial taxonomic settings.

Time Range

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Freshness

Last updated April 2026.

Geography

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