Processed RNA-seq Data for Piscinibacter sakaiensis Under PET and Maltose Conditions

Processed bulk RNA-sequencing data for the bacterium Piscinibacter sakaiensis 201-F6 grown for 4 weeks under three distinct conditions, with 5 biological replicates each. The data includes differential expression analysis across three contrasts, calculated with DESeq2 after alignment to the NCBI RefSeq genome CP166677. Author Jiabao Xu published the dataset on figshare in June 2026.

Use Cases

• Identify genes differentially expressed during biofilm formation on PET based on the described condition contrasts.
• Compare gene expression profiles between PET and maltose carbon sources using the provided planktonic condition data.
• Study the molecular response of Piscinibacter sakaiensis to PET degradation based on the described experimental setup.
• Validate or benchmark RNA-seq analysis pipelines using a dataset with defined biological replicates and a reference genome.

Strengths

• Includes 5 biological replicates per condition, which can support statistical analysis of differential expression.
• Data is processed and includes differential expression results calculated with the standard tool DESeq2.
• The dataset is associated with a specific reference genome (NCBI RefSeq CP166677), providing clear genomic context.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment for some analyses.
• The 2.7 MB file size suggests the dataset is relatively small, potentially containing only summarized results rather than raw sequence data.

Provenance

Source

figshare

Collection Method

RNA-sequencing of Piscinibacter sakaiensis 201-F6 grown in static culture at 30°C for 4 weeks.

Time Range

The experimental duration was 4 weeks; specific collection dates are not provided.

Freshness

Last updated 2026-06-02 13:57:27; freshness should be verified.