Prokka Genome Annotation for Lactiplantibacillus plantarum LAB20

Prokka v1.14.6 annotation files for the draft genome of Lactiplantibacillus plantarum strain LAB20, isolated from a freshwater fish gut. The dataset includes GFF3, GBK, and TSV files providing predicted coding sequences, RNA genes, and functional annotations. Author Nico Dumandan deposited the 43.0 MB dataset on figshare in June 2026, associated with GenBank accession JBXGSX000000000.

Use Cases

• Comparative genomic analysis based on the annotated gene features.
• Functional annotation and gene prediction validation using the provided GFF3 and GBK files.
• Secondary analysis and reproducibility of the genome sequence reported in the associated Microbiology Resource Announcements publication.

Strengths

• Dataset is 43.0 MB in size, containing multiple standard bioinformatics file formats.
• Associated with a specific GenBank accession (JBXGSX000000000) and BioProject (PRJNA1455347) for traceability.
• Files are generated using a specific, named annotation pipeline (Prokka v1.14.6).

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• The description does not specify the number of predicted genes or features.

Provenance

Source

figshare, author Nico Dumandan.

Collection Method

Genome assembled from Illumina NextSeq X paired-end sequencing reads and annotated using the Prokka pipeline.

Freshness

Last updated 2026-06-02 07:03:07; freshness should be verified.

Geography

Strain isolated from an endemic freshwater fish (Leiopotherapon plumbeus) in the Philippines.