Transcriptome data from continuous cultivations of Acididesulfobacillus acetoxydans, an acid-tolerant sulfate-reducing bacterium. The dataset includes raw counts, reads per kilobase, transcripts per million, and scaling factors, and was uploaded by Reinier A. Egas in May 2026. It is provided in a 2.6 MB XLSX file.
Use Cases
- Analyze gene expression changes under proton stress based on the transcriptome data.
- Study acid tolerance adaptation mechanisms in sulfate-reducing bacteria based on the cultivation experiments.
- Compare transcript abundance metrics like reads per kilobase and transcripts per million based on the provided calculations.
- Investigate the metabolic response of organic acid-oxidizing bacteria to environmental stress.
Strengths
- Data is openly available under a CC-BY-4.0 license.
- File size is 2.6 MB, facilitating quick download and inspection.
- Includes multiple transcript quantification metrics such as raw counts, RPK, and TPM.
Limitations
- Row count is unknown, which may limit suitability assessment.
- Column-level documentation is absent; field semantics must be inferred after download.
- Description metadata is limited; actual data quality requires manual inspection after download.
Provenance
- Source
- Reinier A. Egas via figshare.
- Collection Method
- Likely derived from RNA sequencing of continuous cultivations.
- Time Range
- null
- Freshness
- Last updated 2026-05 12:25:53.
- Geography
- null