S2 Table: Phage-Plasmid-Like Element Annotations from CARD, KEGG, VFDB, and BacMet

James I. Mullet provides annotations for phage-plasmid-like elements (PPLEs) sourced from multiple functional databases. The dataset, last updated on 2026-05-29, is a 2.3 MB XLSX file. It likely contains functional trait data for PPLEs identified across diverse environments.

Use Cases

• Identify antimicrobial resistance genes in phage-plasmid-like elements based on annotations from the CARD database.
• Analyze metabolic pathway potential of PPLEs based on KEGG annotations.
• Assess virulence factor content in PPLEs based on VFDB annotations.
• Screen for heavy metal resistance genes in PPLEs based on BacMet annotations.
• Compare functional trait profiles of PPLEs across different environmental samples.

Strengths

• Annotations are sourced from four established functional databases: CARD, KEGG, VFDB, and BacMet.
• The dataset is a manageable 2.3 MB XLSX file, facilitating easy download and inspection.
• It is openly licensed under CC-BY-4.0, permitting broad reuse with attribution.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment for large-scale analyses.
• The description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

James I. Mullet via figshare

Collection Method

Annotations compiled from CARD, KEGG, VFDB, and BacMet databases.

Freshness

Last updated 2026-05-29 17:36:57; freshness should be verified.