Salmon SV-eQTL Script: Structural Variant Associations with Gene Expression

Atlantic salmon genomic data identifies regulatory haplotypes linked to gene expression. The dataset is 115.8 MB and was authored by Marie Saitou, last updated on June 3, 2026. It includes files in formats such as R, SLURM, and TSV.

Use Cases

• Identify expression quantitative trait loci (eQTLs) based on imputed structural variants mentioned in the description
• Analyze regulatory haplotypes based on graph-genotyped variants described
• Study genotype-phenotype associations in Atlantic salmon based on the described genomic data

Strengths

• Dataset size is 115.8 MB, indicating a medium-scale analysis.
• Includes multiple file types (R, SLURM, TSV) suggesting a reproducible analysis pipeline.
• Released under a permissive CC-BY-4.0 license.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

Marie Saitou via figshare

Collection Method

Likely derived from imputed graph-genotyped structural variant analysis.

Freshness

Last updated 2026-06-03 09:07:08; freshness should be verified

Geography

Atlantic salmon (species-specific).