Sosen1 and Sse05_10M: Draft Genome Sequences and Annotations for Senegalese Sole

A 2018 draft genome assembly (Sosen1) of a female Senegalese sole, sequenced with Nanopore technology, includes scaffolds, a provisional annotation, and deduced transcripts and proteins. The dataset also contains a 2020 reannotation of the female genome and a 2020 male genome assembly (Sse05_10M) with integrated genetic markers. The data was made available by M. Gonzalo Claros.

Use Cases

• Comparative genomics analysis based on the separate female and male genome assemblies.
• Gene structure and function prediction based on the provided GFF3 annotation files and protein annotations.
• Transcriptome assembly and analysis based on the provided transcript fasta files.
• Functional enrichment analysis based on the GO terms, KEGG codes, and InterPro IDs included in the protein annotation TSV file.

Strengths

• Includes both a female (Sosen1) and a male (Sse05_10M) genome assembly, enabling sex-specific analyses.
• Provides multiple annotation layers, including protein-coding and non-coding annotations for the female genome.
• Protein annotations include functional information such as UniProtKB orthologues, GO terms, KEGG codes, and InterPro IDs.

Limitations

• Description metadata is limited; actual data quality requires manual inspection after download.
• Row count and genome assembly statistics (e.g., N50, total size) are unknown, which may limit suitability assessment.
• Last update date is unknown; freshness unverified.

Provenance

Source

M. Gonzalo Claros via paperswithcode

Collection Method

Nanopore sequencing for the female genome and a hybrid sequencing and assembly approach for the male genome.

Time Range

Data reflects assemblies and annotations from 2018 and 2020.