Smrtanalysis Settings for Fusarium Oxysporum PacBio Assembly

A 14.7 KB XML file contains the recommended PacBio assembly settings for a Fusarium oxysporum ST33 isolate. The settings were provided by PacBio expert Jenny Gu and applied to RSII P4 and P5 data. The dataset was authored by Christina Cuomo and last updated in April 2026.

Use Cases

• Replicate a PacBio genome assembly pipeline based on the specified XML settings.
• Benchmark assembly performance against recommended parameters for Fusarium oxysporum.
• Use as a reference configuration for assembling other fungal isolates with PacBio RSII data.

Strengths

• Settings are explicitly recommended by a PacBio expert, Jenny Gu.
• The dataset is small (14.7 KB) and focused on a specific assembly task.

Limitations

• The dataset is a single 14.7 KB configuration file, offering limited scope.
• Row count and column-level documentation are absent; data quality requires manual inspection after download.

Provenance

Source

Christina Cuomo via figshare.

Collection Method

Settings used for a PacBio assembly of a Fusarium oxysporum ST33 isolate.

Freshness

Last updated 2026-04-29 21:34:27; freshness should be verified.