SPIN-Seq DNA Sequencing Data for Reaction Kinetics

SPIN-seq_original data contains DNA sequencing results from the SPIN-seq method development project. Jagadish Prasad Hazra created this 9.6 GB collection of CSV, HDF5, and image files to understand sequence-dependent biological reactions and kinetics. The dataset was last updated on April 8, 2026.

Use Cases

• Analyze DNA sequence features from sequencing data to model their effect on reaction kinetics.
• Validate the SPIN-seq method's output by comparing sequence reads in CSV/HDF5 files against control images.
• Train models to predict kinetic parameters from specific sequence motifs identified in the sequencing data.
• Correlate experimental conditions documented in YAML files with resulting sequencing efficiency and image data.

Strengths

• Dataset size is 9.6 GB, indicating substantial raw and processed data.
• Multimodal data includes structured files (CSV, HDF5) and experimental images (PNG, TIF).
• Released under a permissive CC-BY-4.0 license for open reuse.

Limitations

• Unknown row count and specific column schema limit immediate analytical utility.
• Description contains typographical errors, suggesting potential metadata inconsistencies.

Provenance

Source

Jagadish Prasad Hazra on figshare.

Collection Method

Data generated from the SPIN-seq (Sequencing by Polymerase Incubation and Nucleotide sequencing) method development.

Freshness

Last updated in April 2026, indicating recent maintenance.