IndoMEE: Gut Microbiome Relative Abundance Across Indonesian and Singaporean Populations

A catalogue of species-level reference genomes assembled from gut metagenomes of 116 human individuals. The dataset contains relative abundance data for these genomes across 116 Indonesians and 109 Singaporeans, as analyzed in a 2025 Cell Reports study. The samples were collected from 8 communities across the Indonesian archipelago representing hunter-gatherer, agricultural, and urban lifestyles.

Use Cases

• Compare gut microbiome composition based on lifestyle (hunter-gatherer, agricultural, urban) mentioned in the description
• Analyze species-level genomic diversity across different human populations (Indonesian and Singaporean) referenced in the description
• Investigate the relationship between gut microbiome structure and rural-to-urban lifestyle transitions described in the source study

Strengths

• Contains data from 225 total individuals (116 Indonesians and 109 Singaporeans)
• Based on 116 assembled metagenomes from 8 distinct Indonesian communities
• Associated with a peer-reviewed 2025 publication in Cell Reports

Limitations

• Column-level documentation is absent; field semantics must be inferred after download
• Row count is unknown, which may limit suitability assessment
• The dataset size is listed as 0.0 B, indicating a very limited scope

Provenance

Source

CLARISSA FEBINIA

Collection Method

Species-level reference genomes (MAGs) assembled from short-read gut metagenomes.

Freshness

Last updated 2026-05-10 20:33:09

Geography

Indonesian archipelago (8 communities) and Singapore