Symphodus Ocellatus Reference Genome Assembly and Annotation

A reference genome and annotation for the fish species Symphodus ocellatus. The dataset includes a primary genome assembly, a mitogenome, and corresponding gene annotations. It was authored by Ainhoa López and last updated on 2026-05-14.

Use Cases

• Comparative genomics studies based on the Symphodus ocellatus reference genome.
• Gene function and evolution analysis based on the provided genome annotation.
• Mitochondrial genome analysis based on the included mitogenome assembly and annotation.
• Benchmarking genome assembly and annotation tools based on the specified PacBio and Illumina platform data.

Strengths

• Dataset size is 320.0 MB, indicating substantial genomic data.
• Includes multiple data types: a primary genome assembly, a mitogenome, and annotations.
• Uses specific, modern bioinformatics tools like hifiasm, braker, and MitoHifi.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Freshness should be verified as the last update date is in the future (2026-05-14).

Provenance

Source

Ainhoa López

Collection Method

Genome assembly and annotation using PacBio and Illumina sequencing data processed with tools like hifiasm, purge_dups, braker, and MitoHifi.

Freshness

Last updated 2026-05-14 16:09:01