GH3 Gene Family in Nymphaea colorata: 27 Genes Across 22 Species

27 GH3 genes identified in the early-diverging flowering plant Nymphaea colorata, with comparative evolutionary analysis across 22 plant species. The dataset was created by Ziyu Li and last updated on 2026-04-23. It includes results from phylogenetic classification, promoter analysis, and expression profiling.

Use Cases

• Phylogenetic classification of GH3 genes based on the described three-group system.
• Analysis of promoter cis-elements, focusing on hormone-related and light-responsive motifs.
• Inference of gene regulatory networks using predicted Dof transcription factor interactions.
• Comparative evolutionary analysis of gene family expansion across 22 plant species.
• Expression pattern analysis of GH3 genes in specific floral organs like petals, sepals, and stamens.

Strengths

• Identifies 27 specific GH3 genes in Nymphaea colorata.
• Includes comparative data from 22 plant species for evolutionary context.
• Provides promoter analysis revealing abundant hormone-related and light-responsive cis-elements.
• Classifies genes into three conserved phylogenetic groups with specific assignments (23 genes to Group 2).

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• The dataset is small (447.6 KB), indicating limited scope.

Provenance

Source

figshare, author Ziyu Li.

Collection Method

Genome-wide identification and comparative evolutionary analysis, including phylogenetic classification, motif analysis, promoter prediction, and expression profiling.

Freshness

Last updated 2026-04-23 05:35:37; freshness should be verified.