Soybean GID Gene Family: Genome-Wide Analysis and Gibberellin Response

A genome-wide analysis of the GID gene family in soybean, including gene structure, phylogeny, and expression patterns. The dataset includes results from synteny analysis with rice, maize, and Arabidopsis, and qRT-PCR expression data for three genes under gibberellin treatments. The dataset was authored by Zhiyuan Yao and last updated on 2026-05-20.

Use Cases

• Phylogenetic classification of GID genes based on the six subgroups identified in the analysis.
• Analysis of gene expression patterns in different soybean tissues, such as roots, stems, leaves, and seeds.
• Studying gene expression changes under gibberellin hormone treatments at 30, 50, and 80 ppm concentrations.
• Investigating synteny and evolutionary relationships of GID genes between soybean and other plant species.
• Predicting miRNA interactions with GID genes for stress response and seed metabolism studies.

Strengths

• Analysis includes 17 chromosomes where GID genes are distributed.
• Expression profiling covers multiple tissues: roots, stems, leaves, and seeds.
• qRT-PCR analysis was performed on three representative genes (GmGID1, GmGID2, GmGID3) under three different GA concentrations.
• Phylogenetic analysis classified genes into six subgroups and compared them to Arabidopsis homologs.

Limitations

• The dataset is very small (10.8 KB), suggesting limited raw data or summary-level results only.
• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment for statistical modeling.

Provenance

Source

figshare

Collection Method

Genome-wide bioinformatic analysis and experimental qRT-PCR validation, as described in the study.

Freshness

Last updated 2026-05-20 05:44:18; freshness should be verified.