Ziqi Zhang identified 39 putative Groucho/Tup1-like corepressor (GmGTLC) genes in the soybean genome, distributed across 16 chromosomes. The dataset includes phylogenetic classification into six subfamilies, promoter analysis for cis-regulatory elements, and expression profiling across nine plant tissues. RT-qPCR analysis shows gene expression changes in soybean seedlings subjected to cold, salt, and drought stress treatments over time series.
Use Cases
- Identify gene family members and phylogenetic relationships based on the 39 identified GmGTLC genes.
- Analyze promoter regions for cis-regulatory elements associated with light, hormones, and abiotic stress.
- Study gene expression patterns under cold, salt, and drought stress conditions based on RT-qPCR time-series data.
- Investigate potential protein-protein interactions relevant to histone deacetylation based on assays involving GmHOS15A/D and GmHDAC proteins.
Strengths
- Identifies a specific set of 39 genes in the soybean genome.
- Includes expression data across nine distinct plant tissues (roots, hypocotyls, cotyledons, etc.).
- Provides time-series expression data for three abiotic stress treatments (cold, salt, drought) across five time points.
Limitations
- Column-level documentation is absent; field semantics must be inferred after download.
- Row count is unknown, which may limit suitability assessment.
- The 103.9 KB file size suggests a limited scope of data.
Provenance
- Source
- figshare
- Collection Method
- Genome-wide identification, phylogenetic analysis, promoter analysis, and experimental expression profiling via RT-qPCR.
- Freshness
- Last updated 2026-06-04 05:44:00; freshness should be verified.