PFK Gene Family in 12 Solanum Species with Fruit Expression Analysis

156 PFK genes were identified across 12 Solanum species using pan-genome data. The dataset includes results from bioinformatic analyses, protein-protein interaction predictions, and promoter motif scans, along with expression patterns across four fruit developmental stages. It was authored by Zepeng Wang and last updated on March 18, 2026.

Use Cases

• Study gene family evolution based on the identification of PFK and PFP subfamilies across 12 species.
• Analyze stage-specific gene expression patterns during tomato fruit development using RNA-seq data.
• Identify candidate genes for molecular breeding based on the highlighted regulators SolyPFK07 and SolyPFPA2.
• Investigate promoter elements responsive to hormones and abiotic stresses mentioned in the results.

Strengths

• Includes data on 156 identified PFK genes across 12 Solanum species.
• Expression analysis covers four distinct fruit developmental stages.
• Analysis includes protein-protein interaction predictions and promoter motif scans.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• The primary data file is a 605.1 KB DOC file, which may require conversion or specific tools for analysis.

Provenance

Source

figshare, authored by Zepeng Wang.

Collection Method

Identified via pan-genome data analysis; expression characterized via RNA-seq and validated by qRT-PCR.

Freshness

Last updated 2026-03-18 07:38:48; freshness should be verified.