Cucumber ATAC-seq and RNA-seq Data for Low-Nitrogen Tolerance Study

A 11.5 KB Excel file contains tabular data from an integrated ATAC-seq and RNA-seq analysis of cucumber responses to low-nitrogen stress. The dataset, authored by Bowen Li and published in 2026, compares molecular responses between a tolerant (C52) and a sensitive (C13) cucumber accession to identify key transcription factors like CsTGA7.

Use Cases

• Identify differentially accessible chromatin regions from ATAC-seq data to link with transcriptional changes in RNA-seq data.
• Compare gene expression profiles between the tolerant C52 and sensitive C13 accessions under low-nitrogen treatment.
• Analyze transcription factor binding motifs, such as those for bZIP factors like CsTGA7, within ATAC-seq peak data.
• Validate candidate regulator functions by correlating ATAC-seq chromatin accessibility with RNA-seq expression levels for specific genes.

Strengths

• Data is from a controlled study integrating two high-throughput sequencing techniques: ATAC-seq and RNA-seq.
• Includes functional validation results for the identified core regulator CsTGA7 using VIGS.
• Published under a permissive CC BY 4.0 license in 2026, ensuring recent and reusable data.

Limitations

• Very small file size (11.5 KB) suggests the data is highly summarized or a subset, not raw sequencing data.
• Limited to two cucumber accessions (C52 and C13), reducing generalizability across the species.
• Unknown row and column structure within the XLSX file complicates assessment of data depth and features.

Provenance

Source

figshare, authored by Bowen Li.

Collection Method

Integrated time-course RNA-seq and ATAC-seq analyses on cucumber plants under low-nitrogen stress.

Time Range

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Freshness

Last updated March 2026.

Geography

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