Table 1_Transcriptional regulation of root development in cacao: a genome-wide comparative

A study by Rolande Eugenie Ango Makondy, last updated in 2026, examines root development in cacao. It compares whole-root transcriptomes from four seedling types, including zygotic and somatic embryo-derived seedlings, identifying 12,979 differentially expressed genes and over 900 transcription factors. The dataset includes histological analysis and RNA-seq data to investigate lateral root emergence and developmental defects.

Use Cases

• Identify differentially expressed genes and transcription factors based on the reported 12,979 DEGs and 900+ TFs.
• Compare transcriptional patterns between zygotic and somatic embryo-derived seedlings based on the described four seedling types.
• Investigate pathways related to root patterning, such as phytohormone signaling and MAPK cascades, based on the core regulatory modules mentioned.
• Analyze the molecular basis of tissue mispatterning in lateral-rootless somatic seedlings based on the histological findings described.

Strengths

• Identifies 12,979 differentially expressed genes, providing a broad transcriptional profile.
• Profiles over 900 transcription factors from multiple families, including AP2/ERF, MYB, and NAC.
• Compares four distinct cacao seedling types, including a lateral-rootless variant, for developmental contrast.

Limitations

• The dataset is a 1.7 MB DOCX file, which is a small document format not typical for raw genomic data.
• Row count and column-level documentation are unknown, limiting suitability assessment for direct computational analysis.
• Description metadata is limited; actual data quality and structure require manual inspection after download.

Provenance

Source

Rolande Eugenie Ango Makondy via figshare

Collection Method

Whole-root transcriptomes profiled using genome-wide RNA sequencing (RNA-seq); root morphology assessed via tissue microscopy.

Freshness

Last updated 2026-06-03 06:11:53; freshness should be verified.