Pseudomonas PF05 vs PF4.89: Genomic and Transcriptomic Data for Biocontrol Analysis

An integrative genomic and transcriptomic dataset compares the biocontrol activity of Pseudomonas sp. PF05 against Fusarium oxysporum with a related, weakly antagonistic strain. The data, created by Francesca Di Rico and last updated in April 2026, includes analyses of secondary metabolite biosynthesis genes and transcriptional responses during fungal interaction. It is a 172.3 KB Excel file shared under a CC-BY-4.0 license.

Use Cases

• Comparative genomics analysis based on the expanded repertoire of secondary metabolite biosynthesis genes in PF05.
• Transcriptomic profiling to study adaptive responses centered on efflux systems and metabolic reprogramming during fungal interaction.
• Identifying key regulatory and metabolic traits for developing reliable microbial biological control agents (MBCAs).

Strengths

• Data integrates comparative genomics and transcriptomic analyses for a direct functional comparison.
• The dataset is openly shared under a CC-BY-4.0 license, facilitating reuse.
• Analysis focuses on a specific, strong biocontrol strain (PF05) against a major phytopathogen (Fusarium oxysporum).

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• The dataset is small (172.3 KB), indicating limited scope or summary-level data.

Provenance

Source

figshare

Collection Method

Integrative analysis via comparative genomics and transcriptomic profiling of bacterial strains.

Time Range

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Freshness

Last updated 2026-04-10 05:58:27; freshness should be verified.

Geography

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