Eleven whole-genome sequenced isolates of Klebsiella pneumoniae recovered from dairy products and catfish in Egyptian supermarkets. The dataset includes antimicrobial susceptibility test results, sequence types, and genomic analyses of resistance and virulence genes. It was authored by Nuha Anajirih and last updated in April 2026.
Use Cases
- Phylogenetic analysis based on SNP-based reconstruction comparing food and clinical isolates.
- Antimicrobial resistance profiling based on phenotypic susceptibility testing and detected resistance genes.
- Lineage tracking based on multilocus sequence typing (MLST) results, including novel and clinically relevant types.
- Public health risk assessment based on the presence of virulence-associated genes in food isolates.
Strengths
- Includes 11 whole-genome sequenced bacterial isolates.
- Integrates phenotypic antimicrobial susceptibility testing with genomic data.
- Provides phylogenetic context by comparing to 77 publicly available Egyptian clinical isolates.
- Released under a CC-BY-4.0 license for open reuse.
Limitations
- Row count is unknown, which may limit suitability assessment.
- Column-level documentation is absent; field semantics must be inferred after download.
- The dataset is small at 11.3 KB, indicating limited scope.
Provenance
- Source
- figshare
- Collection Method
- Isolates were recovered from food samples, identified by MALDI-TOF MS and confirmed by whole genome sequencing.
- Time Range
- null
- Freshness
- Last updated 2026-04-15 05:33:45; freshness should be verified.
- Geography
- Egypt