Table 3_Comparative analysis of the rhizosphere microbiome and transcriptome in clubroot-s

667,000 hectares of rapeseed in China are affected annually by clubroot disease. This dataset compares soil properties, rhizosphere microbial communities, and transcriptomic responses between a susceptible (HYZ62) and a resistant (HYZ5R) rapeseed variety following Plasmodiophora brassicae infection. It was authored by Jingjing Liao and last updated on 2026-04-21.

Use Cases

• Identify microbial taxa associated with disease resistance based on relative abundance data for genera like Burkholderia-Caballeronia-Paraburkholderia and Trichoderma.
• Analyze differential gene expression related to plant immunity based on mentioned genes such as CML, WRKY, PR1, RIN4, RPS5, and HSP90.
• Correlate soil physicochemical properties, such as electrical conductivity and alkali-hydrolysable nitrogen, with plant health outcomes.
• Investigate the suppression of defense-related secondary metabolic pathways, like phenylpropanoid biosynthesis, upon pathogen infection.

Strengths

• Includes specific quantitative measurements, such as a 30.36% decrease in Bacillus relative abundance and electrical conductivity differences of 1.73x and 1.57x.
• Compares two distinct biological conditions (susceptible vs. resistant varieties) with defined disease indices (54.86 and 17.05).
• Integrates multi-omics data, covering soil properties, microbiome composition, and host transcriptome.

Limitations

• Row count is unknown, which may limit suitability assessment.
• Column-level documentation is absent; field semantics must be inferred after download.
• The dataset is small (27.4 KB), suggesting limited scope, potentially containing summary results rather than raw sequencing data.

Provenance

Source

figshare

Collection Method

Experimental comparison of soil properties, 16S rRNA gene sequencing for microbiome analysis, and RNA sequencing for transcriptome analysis.

Freshness

Last updated 2026-04-21 05:31:27; freshness should be verified.

Geography

Likely China, given the context of the rapeseed industry threat.