Table 3_Integrative genomic and transcriptomic insights into the biocontrol activity of Ps

An Excel dataset from figshare by Francesca Di Rico, last updated April 10, 2026, containing integrative genomic and transcriptomic analyses of two Pseudomonas strains. The data compares the strongly antagonistic Pseudomonas sp. PF05 with the weakly antagonistic Pseudomonas frederiksbergensis PF4.89 in their interaction with the fungal pathogen Fusarium oxysporum. The 2.0 MB file presents findings on genomic potential and transcriptional regulation underlying microbial biocontrol activity.

Use Cases

• Comparative genomics analysis based on the expanded repertoire of secondary metabolite biosynthesis genes in PF05.
• Transcriptomic profiling to study adaptive responses like efflux systems and metabolic reprogramming during fungal interaction.
• Identifying key regulatory and metabolic traits for developing reliable biological control agents based on the described coordinated response.
• Contrasting strain-specific antifungal activity based on the genomic and transcriptional differences between PF05 and PF4.89.

Strengths

• Data is licensed under CC-BY-4.0, permitting open sharing and adaptation.
• Integrates both comparative genomics and transcriptomic analyses for a multifaceted view.
• Directly compares two closely related Pseudomonas strains with differing biocontrol efficacy.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• Description metadata is limited; actual data quality requires manual inspection after download.

Provenance

Source

figshare, authored by Francesca Di Rico.

Collection Method

Generated through comparative genomics and transcriptomic analyses of bacterial strains during interaction with a fungal pathogen.

Time Range

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Freshness

Last updated 2026-04-10 05:58:29; freshness should be verified.

Geography

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