Table 4_Comparative analysis of the rhizosphere microbiome and transcriptome in clubroot-s

Jingjing Liao's dataset compares soil properties, rhizosphere microbial communities, and transcriptomic responses between clubroot-susceptible (HYZ62) and resistant (HYZ5R) rapeseed varieties following Plasmodiophora brassicae infection. The data includes specific measurements such as disease indices (54.86 vs. 17.05), electrical conductivity ratios (1.73x and 1.57x), and relative abundances of microbial genera like Burkholderia-Caballeronia-Paraburkholderia. It was last updated on 2026-04-21.

Use Cases

• Identify microbial taxa associated with disease resistance based on relative abundance differences mentioned in the description.
• Analyze differential gene expression patterns for immunity-related genes such as CML, WRKY, and PR1.
• Correlate soil physicochemical properties, like electrical conductivity and alkali-hydrolysable nitrogen, with plant health outcomes.
• Study the suppression of defense-related secondary metabolic pathways, such as phenylpropanoid biosynthesis, upon pathogen infection.

Strengths

• Includes specific quantitative results, such as disease indices (54.86 and 17.05) and a 30.36% decrease in Bacillus relative abundance.
• Compares multiple data layers: soil properties, microbiome composition, and host transcriptome.
• Focuses on a defined experimental comparison between two genetically distinct rapeseed varieties.

Limitations

• Dataset is very small (26.6 KB), suggesting limited scope or summary-level data rather than raw sequencing reads.
• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment for statistical modeling.

Provenance

Source

figshare, author Jingjing Liao

Collection Method

Experimental comparison of soil properties, 16S rRNA gene sequencing for microbiome, and RNA sequencing for transcriptome in inoculated and uninoculated rapeseed plants.

Freshness

Last updated 2026-04-21 05:31:27; freshness should be verified.

Geography

Likely China, given the context of the rapeseed industry threat mentioned.