Table 4_Integrative genomic and transcriptomic insights into the biocontrol activity of Ps

A 988.8 KB Excel dataset uploaded by Francesca Di Rico on April 10, 2026. It presents integrative genomic and transcriptomic analyses comparing the strongly antagonistic Pseudomonas sp. PF05 strain with a weakly antagonistic relative, Pseudomonas frederiksbergensis PF4.89, to uncover the molecular basis of biocontrol against the fungal pathogen Fusarium oxysporum.

Use Cases

• Comparative genomics analysis based on gene repertoire differences in secondary metabolite biosynthesis pathways.
• Transcriptomic profiling to study adaptive responses like efflux systems and metabolic reprogramming during fungal interaction.
• Identifying key regulatory networks and stress tolerance strategies in biocontrol agents.
• Evaluating genomic potential versus dynamic transcriptional regulation in microbial competition.

Strengths

• Data integrates comparative genomics and transcriptomic analyses for two Pseudomonas strains.
• Specific biological pathways are highlighted, including phenazine metabolism and polyketide biosynthesis.
• Dataset is openly licensed under CC-BY-4.0.

Limitations

• Column-level documentation is absent; field semantics must be inferred after download.
• Row count is unknown, which may limit suitability assessment.
• The 988.8 KB file size indicates a limited scope, likely containing summary or processed results rather than raw sequencing data.

Provenance

Source

figshare

Collection Method

Integrative comparative genomics and transcriptomic analyses from a scientific study.

Time Range

Study period not specified.

Freshness

Last updated 2026-04-10 05:58:30; freshness should be verified.

Geography

Geographic origin of microbial strains not specified.