Sisal SBP Gene Family: 45 Genes with miR156 Targets and Expression Data

Containing genome-wide identification of 45 AhSBP genes in Agave sisalana, with 18 identified as putative miR156 targets. It includes comparative transcriptomics and RT-qPCR validation data analyzing the miR156-AhSBP module's response to pathogen stress in susceptible and resistant cultivars. The data is presented in an Excel file.

Use Cases

• Analyze the expression patterns of AhSBP9 and AhSBP38 in response to pathogen stress using the transcriptomic and qPCR data.
• Identify lineage-specific expansion mechanisms among the 45 AhSBP genes through phylogenetic and synteny modeling data.
• Compare asi-miR156 induction levels and its target AhSBP genes between susceptible and resistant sisal cultivars.
• Examine promoter cis-elements for the 45 AhSBP genes to elucidate regulatory mechanisms under biotic stress.

Strengths

• Identifies a specific set of 45 AhSBP genes from the Agave sisalana genome.
• Pinpoints 18 AhSBP genes as putative targets of miR156 for focused analysis.
• Integrates multiple analysis methods: genome-wide identification, transcriptomics, promoter analysis, and RT-qPCR validation.

Limitations

• The dataset is small at 15.4 KB, indicating limited scope and likely a summary table rather than raw experimental data.
• Rows and specific columns are unknown, limiting detailed reproducibility and secondary analysis.
• Focus is on a single plant species (Agave sisalana), limiting broader comparative genomics applications.

Provenance

Source

figshare, authored by Zhiwei Lu.

Collection Method

Genome-wide identification, phylogenetic and synteny modeling, comparative transcriptomics, promoter cis-element analysis, and RT-qPCR validation.

Freshness

Last updated March 20, 2026.